Schatz lab variant calling pipeline for 10X libraries using Long Ranger 2.1.2: Version 2
- Status
- released
- Title
- Schatz lab variant calling pipeline for 10X libraries using Long Ranger 2.1.2: Version 2
- Assays
- whole genome sequencing assay
- Description
- This is the pipeline used in the Gingeras lab project by Michael Schatz lab to map and call variants from the 10X Genomics Chromium data. The software was largely developed by 10X Genomics.
- Lab
- Thomas Gingeras, CSHL
- Award PI
- Thomas Gingeras, CSHL
Pipeline schematic
Documents
pipeline protocol
- Description
- The document lists the software version and command line for the 10X data processing using Long Ranger.
- Submitted by
- Carrie Davis
- Lab
- Thomas Gingeras, CSHL
- Grant
- U54HG007004