Matrix – ENCODE

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Showing 17241 results

Assay

Biosample

	TF ChIP-seq	Histone ChIP-seq	DNase-seq	total RNA-seq	Mint-ChIP-seq	polyA plus RNA-seq	ATAC-seq	microRNA-seq	snRNA-seq	snATAC-seq	eCLIP	DNAme array	small RNA-seq	WGBS	long read RNA-seq	ChIA-PET	RAMPAGE	RNA microarray	genotyping array	CAGE	intact Hi-C	microRNA counts	RNA Bind-n-Seq	Repli-seq	RRBS	in situ Hi-C	long read scRNA-seq	Repli-chip	PAS-seq	BruChase-seq	polyA minus RNA-seq	FAIRE-seq	RNA-PET	WGS	scRNA-seq	RIP-chip	Bru-seq	BruUV-seq	MS-MS	5C	PRO-cap	RIP-seq	dilution Hi-C	DNA-PET	seqFISH	GRO-cap	MRE-seq	MeDIP-seq	SPRITE	iCLIP	5' RLM RACE	MNase-seq	PRO-seq	Switchgear	Circulome-seq
tissue	439	2175	945	447		399	225	305	390	292	2	121	67	162	112	1	104	2	7	17	82	101			17	8	61	1	14			7		12	12										5
dorsolateral prefrontal cortex	59	188	56	120				43							9						1																								5
adrenal gland	8	39	33	26		11	8	23	59	15	2	5	2	5	19		4				2	2			1		28
heart	6	81	39	21		16	7	25	49	17			1	10	6		2					8
heart left ventricle	16	84	10	9		2	15	5	54	65		3		4	4		2				10	2			1
liver	42	91	24	3		20	8	7	8	8		1	1	9			2					7			1

cell line	2831	773	180	136	54	155	123	39	2	32	250	87	110	18	56	108	29	67	73	50	14	8		92	50	44	2	21	8	28	19	19	26	15	4	18	15	14	13	12	10	9	4	6		4	4	4		3		2	2	2
K562	749	19	4	17		15	4	2		3	145	3	7	1	4	9	1	9	2	9	1	1		6	1	1				2	3	1	6	4		6	1	1	6	2	6	5		3		2	1	1		3		1
HepG2	814	15	2	6		11	2	2		3	105	3	3	2	3	4		6	2	6	1	1		6	2	1				2	3	1	2	3		2	1	1		1
GM12878	188	15	1	5		13	2	2		3		3	6	1	4	6	1	7	2	6	1	1		6	2	5			1	2	3	1	2		2	7	1	1	5	2		4	2	3		2	1	1				1
MCF-7	150	18	4	1		4	1	2		3		2	7		1	4		2	2	3	1	1		6	3					2	1	1	3				1	1		1
HEK293	204	6										2				2		1	2						2

primary cell	74	506	558	241	715	136	71	52	1	29		38	24	7	6	60	16	57	37	30	19	1		12	27	14		7	1	4	11	4	4		2		2	2			1		3
naive thymus-derived CD4-positive, alpha-beta T cell		16	16	5	74	8	2	2		2						2					2
T-cell		11	62	7	18	1	6							1		4												1
naive thymus-derived CD8-positive, alpha-beta T cell			13	2	66	6	3	1		1						1
CD14-positive monocyte	2	21	8		41	8				2			1	1						1	2										1
macrophage		4		78		1

whole organisms	1292			68		41														19									16					3																	2				1
whole organism	1292			64		33														15									15					3																	2				1
carcass				4		8														4									1

in vitro differentiated cells	47	240	38	53	78	22	40	16	2	11		5	11	24	17	2	6	2	4	1		4			2	9	1	30	1		1				3				1										3
dendritic cell		11		25			30																												3														3
motor neuron		18		9			10							10												9
endodermal cell	1	8	2	3	12	2		2		1				2	8													2	1
neuronal stem cell		27	1			2							1	2														1
mesenchymal stem cell		27	1			2							1	1														1

cell-free sample																							111
cell-free sample																							111

organoid	7		2		48
brain	4		2		30
nephron	3				18

technical sample				1											7
technical sample				1											7

Experiment Matrix

Showing 17241 results