Experiment summary for ENCSR977FEF
doi:10.17989/ENCSR977FEF
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- PRDM1
- Biosample summary
- Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM1
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- eGFP-PRDM1 ChIP-seq on human A549
- Nucleic acid type
- DNA
- Size range
- 250-450
- Fragmentation methods
- sonication (Bioruptor Pico)
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
ENCODE4 project
- Lab
- Michael Snyder, Stanford
- Award
- UM1HG009442 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:pCS-177, michael-snyder:pCS-eGFP-PRDM1 A549 ChIP
- Date submitted
- December 21, 2018
- Date released
- July 8, 2020
- Annotation (gkmsvm-model)
- Annotation (BPNet-model)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting H. sapiens PRDM1 | ENCBS223AKZ | ENCGM553STI | ENCAB728YTO | ENCLB870UJU |
| 2 | 1 | Homo sapiens A549 cell line genetically modified (insertion) using CRISPR targeting H. sapiens PRDM1 | ENCBS810DVN | ENCGM553STI | ENCAB728YTO | ENCLB872KJH |