Experiment summary for ENCSR888UWA
doi:10.17989/ENCSR888UWA
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- bab1
- Biosample summary
- Drosophila melanogaster strain bab1-RA (bab1-s)-GFP whole organism female adult genetically modified (insertion) using site-specific recombination targeting D. melanogaster bab1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing -eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:Bab1-GFP
- Date submitted
- April 12, 2019
- Date released
- May 23, 2019
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Drosophila melanogaster strain bab1-RA (bab1-s)-GFP female adult whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster bab1 | ENCBS875LHP | ENCGM041HOL | ENCAB728YTO | ENCLB263UCG |
| 3 | 1 | Drosophila melanogaster strain bab1-RA (bab1-s)-GFP female adult whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster bab1 | ENCBS261EXQ | ENCGM041HOL | ENCAB728YTO | ENCLB222NEN |
| 2 | 1 | Drosophila melanogaster strain bab1-RA (bab1-s)-GFP female adult whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster bab1 | ENCBS549NGS | ENCGM041HOL | ENCAB728YTO | ENCLB595AIN |