1. Experiments
  2. ChIP-seq
  3. Drosophila melanogaster
  4. whole organism

Experiment summary for ENCSR870KTR

doi:10.17989/ENCSR870KTR

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CG16815
Biosample summary
Drosophila melanogaster strain CG16815-GFP whole organism embryo (0-10 hours) genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG16815
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing CG16815-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:CG16815-GFP
Date submitted
December 21, 2016
Date released
January 10, 2017
Submitter comment
ENCFF729GGW, ENCFF327HWE, ENCFF522UCU, ENCFF444NSS were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
31Drosophila melanogaster strain CG16815-GFP mixed sex embryo (0-10 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG16815ENCBS770CBVENCGM451TIOENCAB728YTOENCLB746BCX
21Drosophila melanogaster strain CG16815-GFP mixed sex embryo (0-10 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG16815ENCBS398OVQENCGM451TIOENCAB728YTOENCLB288HXP
11Drosophila melanogaster strain CG16815-GFP mixed sex embryo (0-10 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG16815ENCBS486YJRENCGM451TIOENCAB728YTOENCLB588PHN

Files

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Output type
Replicates

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