Experiment summary for ENCSR784VUY
doi:10.17989/ENCSR784VUY
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- RNF2
- Biosample summary
- Homo sapiens H1
- Biosample Type
- cell line
- Replication type
- isogenic
- Nucleic acid type
- DNA
- Size range
- 300-1000 [1-1]200-900 [2-1]
- Fragmentation methods
- sonication (generic)
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Bradley Bernstein, Broad
- Award
- U54HG006991 (Bradley Bernstein, Broad)
- Project
- ENCODE
- External resources
- Aliases
- bradley-bernstein:Project Element 57
- Date submitted
- February 26, 2016
- Date released
- December 6, 2016
- Annotation (gkmsvm-model)
- Submitter comment
- PJF:For the RNF2 antibody, is this the same one that the Snyder lab validated using IP and mass spec? Is the problem that it was validated for K562 and you have used it for hES? If so, I would be supportive of releasing that data with the statement that the antibody was characterized in K562 cells using an IP-western as a primary and mass spec as a secondary characterization.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
---|---|---|---|---|---|
1 | 1 | Homo sapiens H1 cell line | ENCBS364BFI | ENCAB790JUW | ENCLB770HAP |
2 | 1 | Homo sapiens H1 cell line | ENCBS540UTP | ENCAB790JUW | ENCLB619PPT |