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Experiment summary for ENCSR727PIC

doi:10.17989/ENCSR727PIC

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
ZNF34
Biosample summary
Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF34
Biosample Type
cell line
Replication type
isogenic
Description
eGFP-ZNF34 ChIP-seq on human HEK293 cells.
Nucleic acid type
DNA
Size range
450-650

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:HEK_eGFP-ZNF34_FRT_ChIP
Date submitted
April 27, 2016
Date released
March 7, 2017
Annotation (gkmsvm-model)
Submitter comment
The archived libraries sequenced on HiSeq 2000 did not meet ENCODE read depth requirements. We have therefore provided more deeply sequenced data on HiSeq 4000. Note that the 'mixed platforms' warning stems from the archived HiSeq2000 files, the pipeline was run on just the HiSeq4000 files for consistency.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
21Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF34ENCBS916VDSENCGM675GJKENCAB976SGGENCLB977BDE
11Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF34ENCBS463NTZENCGM675GJKENCAB976SGGENCLB702XMI

Files

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