1. Experiments
  2. ChIP-seq
  3. Drosophila melanogaster
  4. whole organism

Experiment summary for ENCSR624PKN

doi:10.17989/ENCSR624PKN

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CG9727
Biosample summary
Drosophila melanogaster strain CG9727-GFP whole organism embryo (0-24 hours) genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG9727
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing CG9727-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:CG9727-GFP
Date submitted
December 21, 2016
Date released
January 11, 2017
Submitter comment
ENCFF646LRH, ENCFF778ZEB were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
31Drosophila melanogaster strain CG9727-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG9727ENCBS769CROENCGM642AJNENCAB728YTOENCLB697MWS
11Drosophila melanogaster strain CG9727-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG9727ENCBS192QZSENCGM642AJNENCAB728YTOENCLB514AGR
21Drosophila melanogaster strain CG9727-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG9727ENCBS104NIMENCGM642AJNENCAB728YTOENCLB279FLB

Files

Filter files

File format
Output type
Replicates

No files to display.