Experiment summary for ENCSR613JPW
doi:10.17989/ENCSR613JPW
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- Snoo
- Biosample summary
- Drosophila melanogaster strain snoo-MiMIC whole organism pupa genetically modified (insertion) using site-specific recombination targeting D. melanogaster Snoo
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing snoo-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:snoo-MiMIC-GFP
- Date submitted
- December 21, 2016
- Date released
- January 11, 2017
- Submitter comment
- ENCFF206CZX and ENCFF847KIM were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 5 | 1 | Drosophila melanogaster strain snoo-MiMIC mixed sex pupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster Snoo | ENCBS642VUN | ENCGM685KYH | ENCAB728YTO | ENCLB166SRW |
| 3 | 1 | Drosophila melanogaster strain snoo-MiMIC mixed sex pupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster Snoo | ENCBS341GKC | ENCGM685KYH | ENCAB728YTO | ENCLB518FNB |
| 6 | 1 | Drosophila melanogaster strain snoo-MiMIC mixed sex pupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster Snoo | ENCBS387NHE | ENCGM685KYH | ENCAB728YTO | ENCLB673RXG |