Experiment summary for ENCSR549PVK
doi:10.17989/ENCSR549PVK
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- PATZ1
- Biosample summary
- Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- eGFP-PATZ1 ChIP-seq on human K562
- Nucleic acid type
- DNA
- Size range
- 250-450
- Fragmentation methods
- sonication (Bioruptor Pico)
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
ENCODE4 project
- Lab
- Michael Snyder, Stanford
- Award
- UM1HG009442 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:pCS-261, michael-snyder:pCS-eGFP-PATZ1-K562 Chip
- Date submitted
- May 18, 2020
- Date released
- October 7, 2020
- Annotation (gkmsvm-model)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1 | ENCBS196FSV | ENCGM453UHR | ENCAB728YTO | ENCLB436HOE |
| 2 | 1 | Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1 | ENCBS774MUH | ENCGM453UHR | ENCAB728YTO | ENCLB713TFW |