Experiment summary for ENCSR425SCD
doi:10.17989/ENCSR425SCD
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- HmgD
- Biosample summary
- Drosophila melanogaster strain HmgD-GFP whole organism embryo (0-24 hours) genetically modified (insertion) using site-specific recombination targeting D. melanogaster HmgD
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing HmgD-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:HmgD-GFP
- Date submitted
- July 24, 2015
- Date released
- July 6, 2016
- Submitter comment
- ENCFF779VGU, ENCFF547ZLV, ENCFF515YPY, ENCFF924IBH were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
3 | 1 | Drosophila melanogaster strain HmgD-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster HmgD | ENCBS970KWQ | ENCGM396EFG | ENCAB728YTO | ENCLB439JDM |
2 | 1 | Drosophila melanogaster strain HmgD-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster HmgD | ENCBS287ZAL | ENCGM396EFG | ENCAB728YTO | ENCLB121FME |
1 | 1 | Drosophila melanogaster strain HmgD-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster HmgD | ENCBS415MMC | ENCGM396EFG | ENCAB728YTO | ENCLB820JYR |