1. Experiments
  2. ChIP-seq
  3. Drosophila melanogaster
  4. whole organism

Experiment summary for ENCSR373BIM

doi:10.17989/ENCSR373BIM

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
shn
Biosample summary
Drosophila melanogaster strain shn-GFP whole organism embryo (0-24 hours) genetically modified (insertion) using site-specific recombination targeting D. melanogaster shn
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing shn-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:shn-GFP
Date submitted
July 24, 2015
Date released
July 6, 2016
Submitter comment
ENCFF776XJD, ENCFF861WCS, ENCFF387KXN, ENCFF813THZ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
21Drosophila melanogaster strain shn-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster shnENCBS981ILXENCGM514YLQENCAB728YTOENCLB837FZE
11Drosophila melanogaster strain shn-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster shnENCBS321YDKENCGM514YLQENCAB728YTOENCLB872YUF
31Drosophila melanogaster strain shn-GFP mixed sex embryo (0-24 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster shnENCBS052RJFENCGM514YLQENCAB728YTOENCLB253CTH

Files

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Output type
Replicates

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