Experiment summary for ENCSR245UCO
doi:10.17989/ENCSR245UCO
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- GATAd
- Biosample summary
- Drosophila melanogaster strain GATAd-GFP whole organism wandering third instar larva genetically modified (insertion) using site-specific recombination targeting D. melanogaster GATAd
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing GATAd-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (Bioruptor generic)
- Platform
- Illumina HiSeq 2500, Illumina HiSeq 2000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:GATAd-GFP
- Date submitted
- July 23, 2015
- Date released
- July 6, 2016
- Submitter comment
- ENCFF445MCN, ENCFF004ETE, ENCFF365AKS, ENCFF385GCW were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 3 | 1 | Drosophila melanogaster strain GATAd-GFP mixed sex wandering third instar larva whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster GATAd | ENCBS011LYH | ENCGM334IQC | ENCAB728YTO | ENCLB338PKD |
| 2 | 1 | Drosophila melanogaster strain GATAd-GFP mixed sex wandering third instar larva whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster GATAd | ENCBS138OWX | ENCGM334IQC | ENCAB728YTO | ENCLB316LYI |