Experiment summary for ENCSR212YKD
doi:10.17989/ENCSR212YKD
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- SKIL
- Biosample summary
- Homo sapiens GM12878
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- SKIL ChIP-seq on human GM12878
- Nucleic acid type
- DNA
- Size range
- 450-650
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 4000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:ChIPss-124
- Date submitted
- September 29, 2015
- Date released
- July 24, 2017
- Annotation (gkmsvm-model)
- Submitter comment
- Please note that the 'mixed platform' warning comes from the archived fastqs that were sequenced on the HiSeq2000 platform that if used, should be paired with the matching HiSeq2000 control ENCSR398JTO. The pipeline was run on the fastqs and controls sequenced on the HiSeq4000 platform for consistency.
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens GM12878 cell line | ENCBS965YSG | ENCAB000BNW | ENCLB934BCL |
| 1 | 1 | Homo sapiens GM12878 cell line | ENCBS488GLI | ENCAB000BNW | ENCLB319THK |