Experiment summary for ENCSR182EZJ
doi:10.17989/ENCSR182EZJ
Superseded by ENCSR587TRP
Summary
- Status
- archived
- Assay
- ATAC-seq
- Biosample summary
- Homo sapiens SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- ATAC-seq on human cell line SK-N-SH (RA treated)
- Treatments
- 6 μM all-trans-retinoic acid (CHEBI:15367) for 48 hours
- Nucleic acid type
- DNA
- Size range
- 200-7000
- Fragmentation methods
- chemical (Tn5 transposase)
- Platform
- Illumina NovaSeq 6000
Attribution
ENCODE4 project
- Lab
- Michael Snyder, Stanford
- Award
- UM1HG009442 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:pAS-132, michael-snyder:pAS-SK-N-SH (RA treated) bulk ATAC
- Date submitted
- August 1, 2019
- Date released
- August 5, 2020
- Reference Epigenome
- ENCSR192FFL
- Annotation (gkmsvm-model)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS528YTY | ENCLB815ZKS |
| 3 | 1 | Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS228SDJ | ENCLB252SEN |
| 2 | 1 | Homo sapiens SK-N-SH cell line treated with 6 μM all-trans-retinoic acid for 48 hours | ENCBS614HHB | ENCLB575VWN |