Experiment summary for ENCSR018MQH
doi:10.17989/ENCSR018MQH
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- ZNF579
- Biosample summary
- Homo sapiens MCF-7
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- ZNF579 ChIP-seq on human MCF-7
- Nucleic acid type
- DNA
- Size range
- 450-650
- Platform
- Illumina HiSeq 4000, Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:ChIPss-578
- Date submitted
- May 13, 2016
- Date released
- March 8, 2017
- Annotation (gkmsvm-model)
- Submitter comment
- Please note that the 'mixed platform' warning comes from the archived fastqs that were sequenced on the HiSeq2000 platform that if used, should be paired with the matching HiSeq2000 control ENCSR217LRF. The pipeline was run on the fastqs and controls sequenced on the HiSeq4000 platform for consistency.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
---|---|---|---|---|---|
1 | 1 | Homo sapiens MCF-7 cell line | ENCBS697UNO | ENCAB906OMJ | ENCLB608TWG |
2 | 1 | Homo sapiens MCF-7 cell line | ENCBS295PFW | ENCAB906OMJ | ENCLB630TJT |