1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. K562

Experiment summary for ENCSR017GBO

doi:10.17989/ENCSR017GBO

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
TFDP1
Biosample summary
Homo sapiens K562 stably expressing TFDP1
Biosample Type
cell line
Replication type
isogenic
Description
eGFP-TFDP1 ChIP-seq on human K562
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

ENCODE3 project
Lab
Kevin White, UChicago
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
kevin-white:TFDP1_K562
Date submitted
March 14, 2016
Date released
June 13, 2016
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Homo sapiens K562 cell line stably expressing C-terminal eGFP-tagged TFDP1ENCBS546RMDENCGM963QZAENCAB728YTOENCLB069CDH
21Homo sapiens K562 cell line stably expressing C-terminal eGFP-tagged TFDP1ENCBS931GIAENCGM963QZAENCAB728YTOENCLB120KNR

Files

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Output type
Replicates

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