Experiment summary for ENCSR000CPY

doi:10.17989/ENCSR000CPY

Summary

Status
released
Assay
RNA-seq (total RNA-seq)
Biosample summary
Homo sapiens K562 chromatin fraction
Biosample Type
cell line
Replication type
isogenic
Description
The libraries contained in this experiment come from the chromatin fraction of independent growths of cell line K562. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
Nucleic acid type
RNA
Depleted in
rRNA
Size range
>200
Fragmentation methods
see document
Strand specificity
Strand-specific (reverse)
Spike-ins datasets
ENCSR402QNO

Attribution

ENCODE2 project
Lab
Thomas Gingeras, CSHL
Award
U54HG004557 (Thomas Gingeras, CSHL)
Project
ENCODE
External resources
Date submitted
July 13, 2011
Date released
October 17, 2011
Annotation (physical modeling)
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
41Homo sapiens K562 cell line chromatin fractionENCBS750AAAENCLB555ARJ
31Homo sapiens K562 cell line chromatin fractionENCBS747AAAENCLB555APY