v121 released!
August 19, 2021 —
Announcing v121 release of the ENCODE portal, highlighted by the following updates:
- Released matrix page for Rush AD collection
- Improved UI for Cart file view feature
- Added navigation link to Single Cell landing page
- Allowed SingleCellUnit objects to be added to Carts
- Updated link to Azure open dataset in toolbar
- Embedded originated_from property of Biosamples to Experiments
- Added “functional conservation quantifications,” “genome compartment identification,” “sparse peak count matrix,” “redacted transcriptome alignments,” “redacted alignments,” and “fragments” enums to File output_type and Analysis Step input_file_types and output_file_types
- Added “cross-species functional conservation” enum to Annotation annotation_type
- Added “hongkai-ji” as an alias namespace
- Changed default File gallery tab on Experiment pages to the genome browser
- Updated Series pages to display control datasets in a separated table section
- Consolidated handling of strain metadata in biosample_summary of Biosamples and Datasets
- Updated facets and UI for Functional Characterization Series search page
- Adjusted labeling of facets for “term name” related properties
- Added information about examined loci to search results of Functional Characterization Experiment search page
- Added table to Reference and Annotation pages for Functional Characterization Experiments using the Reference or Annotation
- Modified regex pattern for Genetic Modification reagents property to permit additional Thermo Fisher identifiers
- Changed elements_mapping property of Functional Characterization Experiments to an array
- Implemented dependency enforcing control type for pooled clone sequencing datasets
- Added audit to flag CRISPR screen datasets not belonging to series
- Added audit to flag raw data files lacking step_run metadata
- Added audit to flag Annotations with no files
- Added paging feature to Single Cell RNA Series page
- Fixed display of mixed assemblies in File tables of Experiments and prevented non-standard assemblies from appearing on the genome browser
- Fixed bug causing Mouse Development Matrix page to crash
- Fixed UI bug where biosample term names were not displayed correctly on Project pages
- Fixed broken links on RNA-Get page
v121 software version: https://github.com/ENCODE-DCC/encoded/releases/tag/v121.0
All of the source code used for the portal website is open source and available through our repository hosted at GitHub (www.github.com/ENCODE-DCC/)