v117 released!

May 28, 2021

Announcing v117 release of the ENCODE portal, highlighted by the following updates: 

  • Released beta version of RNAget feature
  • Added facets to ChIP-seq Matrix page and implemented other UI updates
  • Added dataset filtering facet to Cart page
  • Added file download feature to Series pages
  • Shifted inherited audits of Experiments to use only the default analysis
  • Added ENCYCLOPEDIAv6 internal tag
  • Removed “single cell” biosample classification
  • Added new enums to Software schema for software_type and used_by
  • Modified Functional Characterization Experiment schema to embed elements references metadata
  • Updated Software schema to add additional facets 
  • Updated Functional Characterization Experiment search with additional facets and updated result titles
  • Added new calculated properties crispr_screen_readout to Functional Characterization Experiment
  • Adjusted embedding in schema for Single Cell Units
  • Added audit to flag mixed expression measurement methods in Functional Characterization Experiments
  • Added disease term name to the Biosample object page
  • Added new Annotation types and sub-types to glossary
  • Added Donor column to metadata.tsv from file batch downloads
  • Updated internal tag links to point to collection pages where appropriate
  • Updated search to return collection pages
  • Updated colors for Revoked and Content Error statuses
  • Added “guide locations” enum to File output_type
  • Fixed genome browser bugs affecting chromatin state Annotations
  • Updated inconsistent analysis files audit
  • Fixed audit error affecting “repeat elements annotation” Files

v117 software version: https://github.com/ENCODE-DCC/encoded/releases/tag/v117.0

All of the source code used for the portal website is open source and available through our repository hosted at GitHub (www.github.com/ENCODE-DCC/)