v113 released!
March 9, 2021 —
Announcing v113 release of the ENCODE portal, highlighted by the following updates:
- Multiple UI updates and bug fixes to File details section and Valis genome browser of Experiment pages
- Added DOIs to datasets
- Added feature to batch download from datasets by Analysis
- Modified Valis genome browser to display preferred files by default
- Added clickable mouse diagram on Mouse Reference Epigenome page
- Added Differentiation Series objects
- Added table on Biosample page to display experiments performed on any child biosamples
- Added more Target related definitions to Glossary
- Added “Target categorization” link to Glossary page
- Allowed lab submission of Analysis Step Runs
- Added “guide quantifications”, “perturbation signal”, “element gene interactions signal”, “element gene interactions p-value”, “curated binding sites”, “curated SNVs”, “dsQTLs”, “eQTLs”, and “PWMs” enum values to Analysis Step input_file_types and output_file_types
- Made Analysis accessions searchable
- Modified set_status options so Documents will inherit from Analysis
- Added new analysis_title property to Analysis
- Changed biochemical_inputs property of Annotation from calculated property to enum list
- Added defect_mode property to DNase Alignment Quality Metric
- Added audits for ChIA-PET datasets
- Updated audits on WGBS datasets
- Relaxed unreplicated audit for Pooled Clone Sequencing experiments
- Exempted mixed_biosample datasets from undetermined replication type audit
- Added audit to flag experiments with inconsistent Analyses
- Changed font on “Rename Cart” modal
v113 software version: https://github.com/ENCODE-DCC/encoded/releases/tag/v113.0
All of the source code used for the portal website is open source and available through our repository hosted at GitHub (www.github.com/ENCODE-DCC/)