v113 released!

March 9, 2021

Announcing v113 release of the ENCODE portal, highlighted by the following updates: 

  • Multiple UI updates and bug fixes to File details section and Valis genome browser of Experiment pages
  • Added DOIs to datasets
  • Added feature to batch download from datasets by Analysis 
  • Modified Valis genome browser to display preferred files by default
  • Added clickable mouse diagram on Mouse Reference Epigenome page
  • Added Differentiation Series objects
  • Added table on Biosample page to display experiments performed on any child biosamples
  • Added more Target related definitions to Glossary
  • Added “Target categorization” link to Glossary page
  • Allowed lab submission of Analysis Step Runs
  • Added “guide quantifications”, “perturbation signal”, “element gene interactions signal”, “element gene interactions p-value”, “curated binding sites”, “curated SNVs”, “dsQTLs”, “eQTLs”, and “PWMs” enum values to Analysis Step input_file_types and output_file_types
  • Made Analysis accessions searchable
  • Modified set_status options so Documents will inherit from Analysis
  • Added new analysis_title property to Analysis
  • Changed biochemical_inputs property of Annotation from calculated property to enum list
  • Added defect_mode property to DNase Alignment Quality Metric
  • Added audits for ChIA-PET datasets
  • Updated audits on WGBS datasets
  • Relaxed unreplicated audit for Pooled Clone Sequencing experiments
  • Exempted mixed_biosample datasets from undetermined replication type audit
  • Added audit to flag experiments with inconsistent Analyses
  • Changed font on “Rename Cart” modal

v113 software version: https://github.com/ENCODE-DCC/encoded/releases/tag/v113.0

All of the source code used for the portal website is open source and available through our repository hosted at GitHub (www.github.com/ENCODE-DCC/)