v111 released!

Announcing v111 release of the ENCODE portal, highlighted by the following updates: 

• Added Series search page
• Updated OBI, EFO, DOID ontologies
• Added “nanopore signal” to File output_types
• Added “capture targets” to File output_types
• Added “capped mRNA” enum for nucleic_acid_term_name Library property
• Added “construction_method” property to Libraries
• Fixed bug where Juicebox dataset visualization option was not displaying where expected
• Updated Analysis drop-down menu on Experiment pages to default to newer pipeline runs
• Revised spelling of “pseudo-replicated” to “pseudoreplicated” in File, Analysis Step, and Annotation properties
• Revised “blacklist” to “exclusion list” in File, Analysis Step, Annotation, and ATAC alignment enrichment quality metric objects
• Changed ethnicity property of HumanDonor to list to permit submission of multiple ethnicities
• Modified NIH institutional certification audit to apply only to ENCODE4 mapping centers
• Added new audit to flag ENCODE4 DNase-seq experiments in which 0 footprints were called
• Added “LRGASP” internal_tag
• Updated glossary file with additional file output type definitions and added section breaks
• Updated log in/create account option and added other cosmetic changes
• Updated account creation to default to using email as last name if not otherwise provided
• Removed Carts for logged out users
• Updated Dataset Search button on Cart page
• Added warning when renaming Carts, and changed Cart default name to “Default cart”
• Disabled some cart actions while a cart operation is in progress
• Updated font styles in drop-down menus

v111 software version: https://github.com/ENCODE-DCC/encoded/releases/tag/v111.0

All of the source code used for the portal website is open source and available through our repository hosted at GitHub (www.github.com/ENCODE-DCC/)