v109 released!

November 10, 2020

Announcing v109 release of the ENCODE portal, highlighted by the following updates: 

  • Added support for .starch file format
  • Allow GenBank reagents in Genetic Modification objects
  • Added “gene stabilities” and “preprocessed alignments” output_types for Files
  • Fixed Dataset Search button in Cart to include all dataset types
  • Fixed alignment of expanding arrows on Matrix pages
  • Displayed location property info on Gene pages
  • Displayed Biosample Characterizations on Transgenic Enhancer Experiment pages
  • Added “supersedes” and “superseded_by” properties to Analysis objects
  • Added SCREEN links to Experiment search result pages
  • Added new facet on Functional Characterization Experiment search page for processed data
  • Added audit to flag experiments with libraries that have inconsistent strand specificity
  • Updated ontologies
  • Fixed missing genes in gene lookup bug
  • Reduced severity of “missing RNA fragment size” audit for Bru-seq experiments
  • Added “related_pipelines” property to Reference file sets
  • Created Quality Standard object and added generation of quality metrics report for Analyses
  • Modified display of “Visualize” column in certain experiments

v109 software version: https://github.com/ENCODE-DCC/encoded/releases/tag/v109.0

All of the source code used for the portal website is open source and available through our repository hosted at GitHub (www.github.com/ENCODE-DCC/)