v109 released!
November 10, 2020 —
Announcing v109 release of the ENCODE portal, highlighted by the following updates:
- Added support for .starch file format
- Allow GenBank reagents in Genetic Modification objects
- Added “gene stabilities” and “preprocessed alignments” output_types for Files
- Fixed Dataset Search button in Cart to include all dataset types
- Fixed alignment of expanding arrows on Matrix pages
- Displayed location property info on Gene pages
- Displayed Biosample Characterizations on Transgenic Enhancer Experiment pages
- Added “supersedes” and “superseded_by” properties to Analysis objects
- Added SCREEN links to Experiment search result pages
- Added new facet on Functional Characterization Experiment search page for processed data
- Added audit to flag experiments with libraries that have inconsistent strand specificity
- Updated ontologies
- Fixed missing genes in gene lookup bug
- Reduced severity of “missing RNA fragment size” audit for Bru-seq experiments
- Added “related_pipelines” property to Reference file sets
- Created Quality Standard object and added generation of quality metrics report for Analyses
- Modified display of “Visualize” column in certain experiments
v109 software version: https://github.com/ENCODE-DCC/encoded/releases/tag/v109.0
All of the source code used for the portal website is open source and available through our repository hosted at GitHub (www.github.com/ENCODE-DCC/)